PDA
Topics
1.1. Protein Identification
1.2. Data Sharing
1.3. Quantification
2.1. Identification - FDR - QC
2.2.1. Quantification - Preprocessing
2.2.2. Wrap-up Preprocessing - Peptide-Level-Models
2.3.1. Quantification - Differential Abundance Analysis
2.3.2. Wrap-up DA - Blocking
Exercises
1. Bioinformatics for Proteomics
2.1. Target Decoy QC
2.2. Quantification - Preprocessing
2.3. Quantification - Design
statOmics
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Mass Spectrometry & Bioinformatics for Proteomics
Lieven Clement
statOmics
, Ghent University
Introduction to Proteomics and MS technology by Prof. Lennart Martens,
CompOmpics
, VIB and UGent, Belgium.
Lecture mass spectrometry basics - Part 1 - Amino Acids and Proteins (30:46)
Lecture mass spectrometry basics - Part 2 - Mass Spectrometry: Concepts and Components. Ion Sources (39:30)
Lecture mass spectrometry basics - Part 3 - Mass Spectrometry: Analysers (34:10)
Lecture mass spectrometry basics - Part 4 - Mass Spectrometry: Detectors (19:01)
Lecture mass spectrometry basics - Part 5 - Mass Spectrometry: FCT-IR and Orbitrap (12:55)
Lecture mass spectrometry basics - Part 6 - Tandem Mass Spectrometry (24:54)
Lecture mass spectrometry basics - Part 7 - A CID Fragmentation Primer (25:37)