This function extracts info that will be used downstream to make
CellDataSet objects compatible with a tradeSeq
analysis
extract_monocle_info(cds)
| cds | A |
|---|
A list with four objects. A pseudotime matrix and a cellWeights
matrix that can be used as input to fitGAM or
evaluateK, the reduced dimension matrix for the cells, and a
list of length the number of lineages, containing the reduced dimension of
each lineage.
For now, this only works for the DDRTree dimentionality reduction. It is the one recommanded by the Monocle developers.