if(!requireNamespace("BiocManager", quietly = TRUE)) {
install.packages("BiocManager")
}
BiocManager::install("msqrob2")
- Participants who want to use the graphical user interface (GUI) can install the msqrob2gui shiny app, start R and run the following commands
if(!requireNamespace("BiocManager", quietly = TRUE)) {
install.packages("BiocManager")
}
if(!requireNamespace("remotes", quietly = TRUE)) {
BiocManager::install("remotes")
}
BiocManager::install("statomics/msqrob2gui")
- check if your installation is working with the following example library(msqrob2)
data(pe)
pe <- aggregateFeatures(pe,i="peptide",fcol="Proteins",name="protein")
pe <- msqrob(pe,i="protein",formula=~condition,modelColumnName="rlm")
getCoef(rowData(pe[["protein"]])$rlm[[1]])
- For testing our package without installation: you can launch an R studio interface in an R docker along with bioconductor packages for proteomics that is running on top of one of our github repositories.
